PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004779-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 922aa    MW: 100407 Da    PI: 7.0139
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004779-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.23e-18332431198
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                    f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g+ W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l
  NNU_004779-RA 332 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDAKGKDWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLQAGDTVTFSRID-PEGKL 425
                    99**************************555566778***************9989999999***9.********************987.77777 PP

                    EEEEE- CS
             B3  93 vvkvfr 98 
                    v+++++
  NNU_004779-RA 426 VMGFRK 431
                    777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-30324439IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-20329432IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-22330431No hitNo description
PROSITE profilePS5086311.053332433IPR003340B3 DNA binding domain
PfamPF023621.4E-15332431IPR003340B3 DNA binding domain
SMARTSM010199.8E-21332432IPR003340B3 DNA binding domain
PROSITE profilePS5105013.771592642IPR011124Zinc finger, CW-type
PfamPF074964.8E-9597639IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MASKICMNAS CGATSSIEWR KGWGLRSGGF ANLCDKCGSA YDQLVFCDTF HLNESGWREC  60
SSCGKRLHCG CIASKPALEL LDNGGVACIG CLKSSEFSSI PSDEKPYKFG DSPMDIIGEP  120
RSTSVDNKID AEGVDKVKLI YFGKGVEGNG LNSLLQSQKD ETIESLGQIK REQLMPPLGE  180
VGSSSFSNLN LASIGSSQVV KGDNTKETIG VKDVYSSLSQ TCLNITLGAP SGPSNIALPI  240
PSAVVEGREQ SKTPSPFQQG PRSRQLLPKP PKASLSGSLE ANKDMLPQIR VARPPAEGRG  300
RNQLLPRYWP RITDQELQQI SGDSNSTIVP LFEKVLSASD AGRIGRLVLP KACAEAYFPP  360
ISQPEGLPLK IQDAKGKDWV FQFRFWPNNN SRMYVLEGVT PCIQSMKLQA GDTVTFSRID  420
PEGKLVMGFR KAANSAPMQD TQISALANGA LANETFFSGV IENLPIISGY SGLLQSLKGR  480
TVPHLNALSE HLSSADGDIN WHKTEKHGSR TNEGPALQPM KRSRNIGSKS KRLLIDSEDA  540
LELKLTWEEA QDLLRPPPSV KPSIVMIEDH VFEEYEEPPV FGKRTIFTAQ PSGKLDQWTQ  600
CDNCSKWRRL PVDALLPPKW TCVDNVWDTD RCSCSAPNEM SPKELENLLR LNMDLKKRRI  660
LASQKPSQER EPSGLDALAT AAVLGDNGGD SGPPSVATTT KHPRHRPGCT CIVCIQPPSG  720
KGPKHKPTCT CNVCMTVKRR FKTLMMRKKK RQSEREAEIA QRKQHIWGPK DETEVENTSK  780
GVLLQLDATD SENRQANESG SVGGQTRILM EKAGENSKAQ IDLNCQPDRE EEQQAGSTRV  840
SMMSLLQVAS LPLETYLKQN GLTSLVSEQQ ASSSSHVVPQ ATGGGESEGQ RPEEGCFASG  900
VRESGGDEEC IEPDQAKSDA VA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-1333143513120DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1737748KRRFKTLMMRKK
2737750KRRFKTLMMRKKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252057.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLF6GXW80.0F6GXW8_VITVI; Putative uncharacterized protein
STRINGVIT_08s0058g01300.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1